im not keen on Magic in sci-fi, dress science up to look like magic, but thats it.
Magic should be for shows like Merlin or Charmed, someone with superior strengh or superior intellgence / technology becomes less specail when there is someone who can undo it all, with just a wave of their hand, or the wiggle of a nose.
That said, RTDs has seemingly gone out of his way to change that.
The Christmas Invasion, blood control appears alot like magic
Last of the Time Lords, looks ALOT like magic
The End of Time, the Masters change is undone when Rassilon waves a glove.
Talking of magical gloves, did they ever explain how the Risen Meten worked? whilst both Torchwood and SJA has dealt with something that looks ALOT like ghosts, to say nothing of the giant demon, which was apparntly hidden under Cardiff, and same deal in SJA.
So plenty of looks like magic stuff in the Whoverse.