Here's my scheme: On the port side, you have shuttles #1 and #2, and go down a deck and you get to work bees #3 and #4 and #5. Continue to the starboard side and you have shuttles #6 and #7, and go down a deck to bees #8, #9, and #10. Any craft temporarily attached to Enterprise would carry numbers #11 or higher.
Thoughts? Comments?
I like this but would suggest that you number shuttles and pods down the port side with even numbers and those down the starboard with odd numbers. Not only does this make it operationally easier to sort craft but is also in keeping with naval and aeronautic traditions.