Actually, I do think that homophobia was at work on the production of all of the trek series.
For instance, on the TNG Trill episode, people have noted that Dr. Crusher could not deal with Odan as a woman. What a lot of people forget is that Gates McFadden HERSELF protested that ending and found it in appropriate.
Of course the fact that a lover is constantly changing bodies wouldn't spook anyone.
In the TNG episode The Offspring, Data defines love as being something that develops between a man and a woman. Once again, members of the cast, including Whoopie Goldberg, protested the way the scene was written and again they were overruled.
Can't find anything like this in the transcripts. This is the closest I came up with:
***
(A couple by the far wall are gazing into each others eyes and holding hands)
GUINAN: You see?
LAL: What are they doing?
GUINAN: It's called flirting.
LAL: They seem to be communicating telepathically.
GUINAN: They're both thinking the same thing, if that's what you mean.
LAL: Guinan, is the joining of hands a symbolic act for humans?
GUINAN: It shows affection. Humans like to touch each other. They start with the hands, and go from there.
LAL: He's biting that female.
GUINAN: No, he's not biting. They're pressing lips. It's called kissing.
LAL: Why are they leaving?
GUINAN: Lal, there are some things your father's just going to have to explain to you when he thinks you're ready.
(Guinan moves away, and Riker comes in. Lal promptly starts flirting, and her voice deepens)
RIKER: You're new around here, aren't you?
LAL: Yes.
(She reaches across the bar, pulls Riker towards herself and kisses him. Data enters)
GUINAN: Lal! Lal, put him down.
DATA: Commander, what are your intentions toward my daughter?
RIKER: Your daughter? Nice to meet you.
***
Keep in mind that the script for Blood and Fire was written for TNG, gay themes and all....someone that was NOT GR pulled thte plug.
Pretty sure I remember reading that Roddenberry and Gerrold had major disagreements about 'Blood and Fire'.
I can recall a specific incident on Voyager that SCREAMED homophobia...it was the episode where the Doctor inhabited Seven's body. At some point in the episode a male character starts hitting on Seven/Doctor and the Doctor recoils in horror at the very thought of that happening.
During the production of Enterprise....SOMEONE made an executive decision to put an end to Archer and Trip's late night conversations and hanging out because there were rumors flying around the net that their relationship might be more than friends. Someone put an end to that fast because Trip and Archer started spending a lot less time together and around the same time we got the silliness of A Night in Sickbay...and the suggestion that Archer needed to spend some time with a woman.
Can't really speak to these two as I didn't pay much attention to the production of either show.
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