As a point of clarification, I'm not speaking out against disliking the Prequel Trilogy; I'm primarily speaking out against two things:
1) The notion that the Prequel Trilogy is universally hated (which is demonstrably false)
2) That the vocal minority that dislikes the Prequel Trilogy has the right to pass off their own ideas about what "should've" been done with the Prequel Trilogy as being rooted in some kind of universally accepted truth/fact by "fan-editing" the movies and/or claiming that they, and only they, truly understand what the Prequels "needed" in order to be "successful", especially when the films were in fact ALREADY successful.
I disagree with the idea that the people who dislike the movie's are in the minority. When something becomes famous for for being seen as bad then that says something. It's no different than how people feel about "Batman and Robin" or"Batman vs Superman." While quality of the fillm's are always subjective i'm not sure it is when it comes to overal popularity. I do think people are overall a little more positive with the second and third even though the dislike for Hayden Christensen seems to be way into the negative.
Also I think most fans don't even have a problem with the stories. It's all about the way the stories were told. I don't think anyone every was against the idea of seeing how Darth Vader became who he was or the fall of the Jedi and the republic. The basic setup is very much a good thing which is why I would love a reboot. I would love to see this concept be done the right way.
Jason