I loved
Final Frontier (much more than
Best Destiny, btw), but I never read any of the DC Comics' series (save for a few TOS and TNG issues in the mid-90's), so I don't know if that counts
I think
Federation is *far* better than
First Contact, when it comes to the depictions of Cochrane and 21C Earth.
In the case of
Starfleet:Year One, I have to admit to liking the on-screen depictions of
Enterprise's pre-UFP Starfleet (something about
Year One just didn't sit righy IMO).
Last in TOS, I think
Crucible:McCoy told a superior story of Bones' post-series and movies days, to some of the plots that have him show up to advise the TNG crew (only
Crossover comes to mind right now, though..

)
Going into the 24th Century, I thought
Dark Mirror was better and more in line with the MU as it was conceived, than the DS9 episodes. I also think
Vendetta was a better "sequel" to BOBW than the Borg episodes that followed (I
, Borg and
Descent, IIRC).Not that it contradicted anything, it was just a better Borg story...
... and finishing with the Borg in a way, I *much* prefer the
Destiny Trilogy to the continuity of ST:O (Path to 2409), as regards to the Borg invasion and later events.