Neither is J.J. Abrams. It's pretty clear that he expects everyone to notice that this movie is being made in the twenty-first century and that nothing in it looks like it did in 1966. There's no problem or contraction there. The analogy works just fine.
I'm not sure what your definition is for "analogy," but it sure doesn't apply here,
SP. One of the big problems with the majority of these arguments is one side tries to make a point about the time in which the films/series are made, confusing it with the
timelines being portrayed in the film/series, which is exactly what you've done here.
It doesn't matter whether the movie is made 40 years after the series - the timeline that is being promoted is one that occurs
before TOS. You don't Photoshop a non-existent person into an old photo and say, "He's actually the father of the other guy in the photo, even though the son is wearing a striped longjohn swimsuit and the 'father' is wearing a Speedo, because, well, we were wearing Speedos when the Photoshop was done." Same logic.
Nah, the analogy works fine.
The only way that there is a problem, here, is when people adopt the critical position that this is real - that it represents something like actual history, a past which is in some respects immutable. It's from this kind of erroneous premise that we get all kinds of silliness about jets in WW II movies, or other obvious historical distortions.
This is a new version of a piece of fiction. There are
no established facts about history or the appearence of anything that must be adhered to in order to be "accurate" or to "avoid mistakes."
Abrams isn't "telling us that this Enterprise looks like the 1966 Enterprise or in only a few short years it will look like the 1966 Enterprise." This version of "Star Trek" will never look like the forty year old version, and no one imagines that anyone will mistake one for the other.
It happens that the 2009 "Star Trek universe" doesn't look like the 1966 "Star Trek universe" - but there is no actual 23rd century history against which one can be judged to be accurate and the other not - all that can be established is which came first.