Here, thanks to Chrissy's Transcripts site, are all the references I could find (with highlighting added by me):This may have been discussed before, but is the term "nacelle" used in "The Savage Curtain" or "By Any Other Name," one where separation is discussed and the other where catastrophic explosion is discussed when positive energy is suggested to be combined with anti-matter?
2x06 THE DOOMSDAY MACHINE
KIRK: We have to stop it. If it's a robot, what are the chances of deactivating it?
SPOCK: I would say none, Captain. The energy generated by our power nacelles seems to attract it.
2x09 THE APPLE
KIRK: Tie every ounce of power the ship has into the impulse engines. Discard the warp drive nacelles if you have to, and crack out of there with the main section, but get that ship out of there!
2x14 BREAD AND CIRCUSES
SPOCK: The space debris comes from the survey vessel SS Beagle. ... Portions of the antimatter nacelles, personal belongings.
2x21 BY ANY OTHER NAME
SPOCK: The barrier we must penetrate is composed of negative energy.
SCOTT: I have opened the control valves to the matter-anti-matter nacelles. On your signal, I will flood them with positive energy.
3x22 THE SAVAGE CURTAIN
KIRK: Scotty, inform Starfleet Command. Disengage nacelles, jettison if possible. Mister Spock, assist them.
Personally, I would not consider the secondary hull a "nacelle" in the context of the available canonical dialog, but I also don't think we have to call it one for Kirk's line in The Apple to make sense. "Discard the nacelles" could be a general command that in some cases involves dropping them individually while in other cases means saucer separation. I would assume the support pylons could be disconnected at the top and/or the bottom, leaving multiple drop-points to ditch the nacelles.
If you "crack out of there with the main section," you are definitely discarding the nacelles. You might also be discarding the engineering hull, or you might not, but that's not the primary or even secondary point to articulate in this moment of crisis. Abandon the now-useless warp drive; save the saucer; if you can also save the secondary hull, great, but Kirk's leaving that "detail" up to Scotty.
From a production standpoint, this is a way to convey the drama of the situation without getting so specific about how this all works that you pigeonhole yourself in future episodes.
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