I enjoyed Star Trek (2009) but it’s a film whose flaws become more apparent with each viewing. It’s an action film with the elements of Star Trek overlayed and adapted on top of a formula, with JJ Abrams using Star Wars as his guide.
For example, Kirk’s story is basically Luke Skywalker’s “hero’s journey” by way of Joseph Campbell. A boy without much of a connection to his parents, but a family legacy of greatness, who is pushed by an elder figure (Obi-Wan/Pike) to embrace his destiny and leave a rural backwater and join the larger universe to affect change.
It also has Abrams’ tendency to skip over plot and character development if it gets in the way of the action. So stuff like the passage of time or natural progression of decisions get thrown out the window if it gets in the way of moving the action from where it is to where he wants it to go. The perfect example of that is Spock ejecting Kirk out of the Enterprise in an escape pod. There is ABSOLUTELY no reason in the story to do that. But the story NEEDS that to happen in order to introduce Prime Spock and Scotty.
The escape pod lands on a planet, and after an unnecessary action scene with an ice monster, what would you know Kirk landed right near where Prime Spock is, and what would you know they’re within walking distance of where Scotty is stationed, and what would you know Spock has the technical ability to beam them back to the Enterprise.
When you get to Into Darkness, all of these issues become amplified, in part because Into Darkness instead of growing from the events of (2009) decides to redo a lot of them. Instead of building on the Kirk-Spock relationship, they redo the tension of them finding a way to be friends. Instead of Kirk building on ways for him to be a leader, he spends a good part of the film redoing the same self-doubts about whether or not he should be in the chair in the first place. And it’s all compounded by the fact that the entire story revolves around a villain reveal that has no significance to these characters, because they don’t have the history with him that gives Wrath of Khan its edge and theme of consequences.