I would think "We had to travel to the future or if Control re-emerged it could've wiped out life everywhere!" is a good of reason to make an exception. Survival versus following the letter of the law. I'll take survival.
I'm guessing Fateor must hate Star Trek III: The Search for Spock with Kirk breaking rules and violating the chain of command. How dare Kirk. Or Picard violating orders in Star Trek: First Contact to save Earth from Borg Assimilation. How dare Picard. Sometimes, you just have to say, "To Hell with our orders."
Hold on. Wait for it, wait for it... "But that's different!"