Dropped storyline:
What happened to Crewman Daniel's super spooky quarters? Did they get blown up? Did Starfleet command get their hands on all that technology? They had this resource that had the schematics for every ship ever made. I think they used it two or three times. Eventually it ceased to exist.
Presumably, Daniels would've cleared that place up, possibly after the "end" of the TCW in Stormfront.
Or, we could assume a Future's End type scenario, where Starfleet (Section 31?) got ahold of that database, scrubbed it for what information they could, and then changed the timeline by advancing their technology.
I know what you're thinking, and I'm not arguing that there was a reboot (even of the temporal kind, a la 2009). This would be a predestination situation. Starfleet always got a leg up thanks to Daniels and his database. They even "hypothesize" this in Discovery ("time travellers are the reasons for advances in society" paraphrased).
Daniels' database is probably incomplete, mission sensitive, or purposely fabricated.