@Vandervecken: Non sequitur. Nobody expects the Federation to agree to its own destruction - if you think that, by adhering to basic rules of decency and civilization, this must lead to weakness and destruction, you must have remarkably little faith in the Federation's ability to protect itself legally.
To put it another way: Do you believe police departments and governments should be allowed to use torture? Ignore basic human rights and due process? Because that's essentially what we are discussing here.
Now I call non-sequitur. Policing of domestic crime is not war. Not only is that not essentially what we are discussing, it isn't even close. Police have the full weight of government's powers to back them up in their interpretation of the law. In war, the ONLY thing that backs you up is force, period. NOT ONE of the rights you have just listed has a thing to do with war.
To address your point: decency as you name it must fall by the wayside where survival itself is at stake. If you're dead, or enslaved or mutated, you don't get to mull over your ethics or anyone else's.
Hence: Inter arma enim silent leges.
About the Federation and its ethics: They had the Founders by the throat--thanks to Section 31 (please note that I am not saying that the Federation won the war due to Sec 31. Winning the war was a multifarious effort and many, including Sec 31, get the credit. I am just saying that the Founders were utterly at the Federation's mercy thanks to Sec 31). And after all those
racist bastards in the Gamma Quadrant did to the Federation and the AQ,
still the cumulative decision of the Federation was mercy to their enemies. They showed them mercy that the Dominion would never have shown the Federation in reversed positions. Ethically, the Federation is still head and shoulders above all the rest. That they are not the suicidal paragons you would like them to be just testifies to the Federation actually believing it has some duty to protect its own citizens first.
You and I are never going to agree on this. I've had this argument before. If you don't accept that survival trumps all else, and that in a war situation there is NO governing authority to take one of the sides aside and say "bad, you can't do this, stop now or I will imprison or execute you"--which is the explicit threat behind all domestic police powers, a threat that is utterly empty between warring polities--then we can never agree.
How is every Founder being punished--which seems to be what you're advocating--fair?.
Even more--far, far more--than, say, a human despot and warmonger's inner circle, the Founders are responsible
in toto and as a species for the Dominion war because of the nature of the Great Link and because they went out of their way to make themselves the GODS of the GQ.. They are all aware of what all the others know, and they are in agreement. There are no dissenting Founders--except for Odo, who did not participate in the Link since his immature state. And they made their species the ruling SPECIES. It is not only
fair that all the Founders be punished, it is
justice. Also, logical. And it didn't happen.