I agree with others saying that Chakotay won't mutiny. Despite sheer #s in his favor he still may have acted in a pragmatic manner, attempting to merge with Janeway's crew and work alongside them in some fashion. However, with the numbers were reversed Chak might have gotten more resistance from his Maquis mates to the point where they rebelled and threw both C and J in the brig for the duration of the trip. Try that one on for size JC people! What the heck else are you gong to do spending the rest of your natural born life (or even the next 7 years) in the brig?