If we want to consider Trek outside TOS at all, we face the issue of ENT already showing the physical torpedo casings in use in the 22nd century.
Beyond that, I doubt TOS "would" ever have treated the torpedoes as nonphysical if the issue actually arose. The audience would have expectations; the show had catered to those very 1960s expectations until then; and a torpedo would be an obvious prop TPTB would be itching to build if there existed a dramatic excuse. We know there are dedicated phaser crews (working very much like the people in charge of firing WWII era turret guns, even when they don't handle physical shells), so we would assuredly also get torpedo crews (who would now have an excuse of handling actual, exciting props).
Its interesting how everyone accepts the FJ location for the Photon Torpedoes, where stock photo pretty much always shows them being emitted from the bottom of the saucer.
I have only one reason for disbelieving in the FJ location
in addition to the onscreen location. Well, two, really, facets of the same issue:
1) The onscreen torps came from a location where there was nothing visible to mark the launchers. The FJ location has markings, namely the two portholes.
2) TAS uses those same markings for phasers.
Onscreen facts would have us believe that torpedo launchers either have their muzzles covered by "gunports" except at the very moment of firing, or then do not involve muzzles at all (say, they might generate the glowing weapon some distance outside the hull, perhaps outside the ship's shields). In comparison, the FJ location is either too primitive ("naked" muzzles) or
way too primitive (physical muzzles where magitech ought to materialize the torps instead).
Personally, I prefer to think of Kirk's torp launchers as direct successors of Archer's: small round holes in the hull, only now with a dog flap over them. The same goes for phasers: they pop up from beneath their trapdoors, and the modern ones are simply less visually distinct than the 22nd century predecessors. But in the 2270s, naked guns suddenly come into fashion. Psychological warfare to make the Klingons respect Starfleet more?
Timo Saloniemi