Top five animated Trek

[Dale Sams]

Yesteryear
The Slaver Weapon
Beyond the Farthest Star
One of our Planets is Missing
The Eye of the Beholder

 

[Galileo7]

TAS top five episodes for myself:

Time Trap
Slaver Weapon
One of Our Planets is Missing
More Troubles, More Tribbles
Ambergris Element

 

[Dale Sams]

The fun thing about the animated eps is that the novelizations came out not long after. They do very well to flesh out some of the stories into some really solid Sci-Fi.