I rewatched STID over the weekend and jotted down some thoughts as they occurred to me. They might seem obvious, or silly... Whatever, man, that's not my problem! 

- The Nibiru aliens resemble the new aliens in STB - white face with thin black line markings. But the STID aliens had rather lumpy faces, suggesting they might be covered with mud or clay in tribal markings, rather than it being a physiological feature. (Did you know "Nibiru" supposedly comes from Babylonian astronomy? It is also a name given to a hypothetical planet in far Sol orbit.)
- The dominant colour in NuTrek? White. A gleaming white seems to be at the base of most of the visuals, this unique look presumably obtained via digital grading.
- Kirk is a punk from the beginning of the story: this is the story of his "seasoning". Sadly there wasn't an overt "I have learned something" speech at the end to make his growth clear.
- The cure Khan offers to save the little girl is his blood! The deus ex machina was there all along.
- Those curious military-style caps people are wearing around Starfleet headquarters. A slightly odd choice; don't know if they'll stick with that in later films.
- Why does Spock mind-meld with dying Pike? Is he absorbing his katra? Is this a skill all Vulcans are taught, so he does it automatically?
- Khan's attack ship seems to be armed with heavy machine guns.
- Marcus walks past a row of ships, interesting for various reasons, and ending with the Vengeance! I missed this foreshadowing before as I was paying attention to the drama. (Although why he would publicly display a model of a top-secret project...)
- Once they are on the Enterprise, McCoy tells Kirk "Your vitals are way off." What does this mean?!? Does Kirk have cat-girl clap? That magic blood can cure all kinds of things...
- So, Keenser is basically Scotty's slave, right?
- "You don't rob a bank when the getaway car has a flat tire." What the hell does McCoy know about robbing banks?
- They fly a captured K'normian ship down to Kronos, K'normian being an obscure reference to TMP. It's a rather uninteresting ship, except for the circular seating arrangement for the cockpit area.
- Those moon fragments floating above Kronos are ridiculous - unless they were somehow infused with antigravitonium?
- The Khan/Klingon fight - we hear Klingon voices from various directions for no obvious reasons. All the voices seem to be done by the same guy.
- When Spock tells Kirk who Carol really is, he looks like a smug bastard.
- How did Scotty get a shuttlepod and fly it to Jupiter, and why did the baddies not notice him? If basic security is that bad, Marcus's scheme is doomed before it's begun. (Remember when Scott says "Are you Starfleet or private security?"; he was probably thinking "If you were Starfleet, you would have arrested me by now instead of making chit-chat, yer daft bugger.")
- The torpedos' fuel cells, which take up the bulk of the torpedos' profile, were replaced with cryopods. So how exactly were these torpedos supposed to be propelled?
- Why move Khan to medbay?
- Kirk and Khan crouch before the space-jump - an echo of Spock crouching before beaming in ST09?
- Every time people are dying on Enterprise, I can hear the same woman's scream.
- During Kirk's death scene, Spock looks emotional. Kirk just looks bloated.
- Spock chasing Kahn through SF - they're doing the Tom Cruise run!
- McCoy insists they need Khan's blood - couldn't he at least TRY the blood of one of the other 72 superhumans he has close at hand?
- Spock and Khan appear to be fighting on top of some sort of flying garbage truck. It looks filthy! Or is that grot the residue of the Vengeance crashing into SF?
- Kirk getting a flashback of Pike's motivational speech as he comes around is a nice touch.
- So will Khan etc be shipped to a secret warehouse to be worked on by "top men" - or will they be dropped off on Ceti Alpha V?
- "Space, the final frontier..." This speech nicely sets up that the NuTrek crew will finally go exploring (but Pine's delivery is painful; why didn't they re-do that ADR?).
- Sulu: "Captain does have a nice ring to it." Noooo!! What are those script writers trying to do? If we start hearing about Cho and Pine feuding because Cho thinks Pine is blocking his chance at a solo movie, we will know who to blame.
- I hate the unsubtle, brain-pounding end title music, which undoes the anticipation of exploration created at the end of the movie. I want something more mysterious and magical, dammit. The human adventure is just beginning, after all...
- The dominant colour in NuTrek? White. A gleaming white seems to be at the base of most of the visuals, this unique look presumably obtained via digital grading.
- Kirk is a punk from the beginning of the story: this is the story of his "seasoning". Sadly there wasn't an overt "I have learned something" speech at the end to make his growth clear.
- The cure Khan offers to save the little girl is his blood! The deus ex machina was there all along.
- Those curious military-style caps people are wearing around Starfleet headquarters. A slightly odd choice; don't know if they'll stick with that in later films.
- Why does Spock mind-meld with dying Pike? Is he absorbing his katra? Is this a skill all Vulcans are taught, so he does it automatically?
- Khan's attack ship seems to be armed with heavy machine guns.

- Marcus walks past a row of ships, interesting for various reasons, and ending with the Vengeance! I missed this foreshadowing before as I was paying attention to the drama. (Although why he would publicly display a model of a top-secret project...)
- Once they are on the Enterprise, McCoy tells Kirk "Your vitals are way off." What does this mean?!? Does Kirk have cat-girl clap? That magic blood can cure all kinds of things...
- So, Keenser is basically Scotty's slave, right?
- "You don't rob a bank when the getaway car has a flat tire." What the hell does McCoy know about robbing banks?
- They fly a captured K'normian ship down to Kronos, K'normian being an obscure reference to TMP. It's a rather uninteresting ship, except for the circular seating arrangement for the cockpit area.
- Those moon fragments floating above Kronos are ridiculous - unless they were somehow infused with antigravitonium?
- The Khan/Klingon fight - we hear Klingon voices from various directions for no obvious reasons. All the voices seem to be done by the same guy.
- When Spock tells Kirk who Carol really is, he looks like a smug bastard.
- How did Scotty get a shuttlepod and fly it to Jupiter, and why did the baddies not notice him? If basic security is that bad, Marcus's scheme is doomed before it's begun. (Remember when Scott says "Are you Starfleet or private security?"; he was probably thinking "If you were Starfleet, you would have arrested me by now instead of making chit-chat, yer daft bugger.")
- The torpedos' fuel cells, which take up the bulk of the torpedos' profile, were replaced with cryopods. So how exactly were these torpedos supposed to be propelled?
- Why move Khan to medbay?
- Kirk and Khan crouch before the space-jump - an echo of Spock crouching before beaming in ST09?
- Every time people are dying on Enterprise, I can hear the same woman's scream.
- During Kirk's death scene, Spock looks emotional. Kirk just looks bloated.
- Spock chasing Kahn through SF - they're doing the Tom Cruise run!
- McCoy insists they need Khan's blood - couldn't he at least TRY the blood of one of the other 72 superhumans he has close at hand?
- Spock and Khan appear to be fighting on top of some sort of flying garbage truck. It looks filthy! Or is that grot the residue of the Vengeance crashing into SF?
- Kirk getting a flashback of Pike's motivational speech as he comes around is a nice touch.
- So will Khan etc be shipped to a secret warehouse to be worked on by "top men" - or will they be dropped off on Ceti Alpha V?
- "Space, the final frontier..." This speech nicely sets up that the NuTrek crew will finally go exploring (but Pine's delivery is painful; why didn't they re-do that ADR?).
- Sulu: "Captain does have a nice ring to it." Noooo!! What are those script writers trying to do? If we start hearing about Cho and Pine feuding because Cho thinks Pine is blocking his chance at a solo movie, we will know who to blame.
- I hate the unsubtle, brain-pounding end title music, which undoes the anticipation of exploration created at the end of the movie. I want something more mysterious and magical, dammit. The human adventure is just beginning, after all...