so the films (and many episodes) have often been about recent events/issues: Trek VI was all about the recent end of coldwar/'the wall coming down in space'.. TMP was abit about the recent Voyager probe, IV was about the whales/greenpeace and even II & III had a coldwar/nuclear doomsday theme and of course V was influenced by the televangelism craze.
... but this virus is a huge monumental thing the biggest thing since WW2 really (and Trek films haven't done a virus/pandemic film yet although FC was closest). so it wouldn't be unreasonable/ unfeasible for the next movie (be it kelvin or not) to reflect that in the star trek/scifi way..in fact it might be wrong not to do so..
... but this virus is a huge monumental thing the biggest thing since WW2 really (and Trek films haven't done a virus/pandemic film yet although FC was closest). so it wouldn't be unreasonable/ unfeasible for the next movie (be it kelvin or not) to reflect that in the star trek/scifi way..in fact it might be wrong not to do so..