I do have one possible idea for a story: S31 sends Khan to infiltrate a Klingon research facility that is developing an army of Klingon Augments. Khan's mission is to destroy the entire operation, including all Augments. I picture this as being one of Khan's first assignments for S31, so the organization isn't yet ready to implicate the Federation and start a war, but they want to test Khan's loyalty to them. How's this?
Do warp-capable ships leave vapor trails...?
That's doesn't fit the background of what Section 31 is:Why not just make Khan the person who founded Section 31 in the 20th century?
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