How about these changes...
Archer's logs cause a massive rewriting of Federation history.
Riker looks at an Enterprise decon scene and says: "What idiot invented biofilters?"
The designers of the Akira-class starship are accused of stealing their design from the NX-01.
The steward in Ten Forward is shown to be Daniels.
Several Xindi crewmen appear in Ten Forward, complaining they've been accidentally locked in a transdimensional cupboard all these years.
Counsellor Troi speculates that Archer's frequent beatings were due to subconscious masochism.
Troi says that Starfleet didn't have counsellors in those days, because people could state the obvious themselves.
T'Pol asks Chef why he's suddenly acting like a debonair ladies man.
When Riker says "I need to know which root you prefer" T'pol replies: "None of your damned business."
Riker asks what the word 'ass' means, as it's no longer used in the year 2370. T'Pol demonstrates by way of the Vulcan Bum Pinch.
The holodeck arch appears every time Riker speaks the captain's name.
Riker gropes a female MACO and gets his butt handed to him.
In an overdue acknowledgement that homosexuals exist in the Star Trek universe, Riker asks Reed if he's ever been attracted to Trip. But as no homosexual was ever seen in the Star Trek universe the scene is removed for continuity reasons.
When Shran says "You owe me!" Archer replies: "I still owe you a thorough beating too!"
On seeing Shran's map of the trading outpost, Archer says: "My God, it's full of bars!"
Shran's refusal to hand over the Tenebian amethyst is explained when he calls it his 'precious'.
T'Pol points out that Rigel Ten is Planet X in roman numerals, and rebukes Archer for involving them in this sci-fi cliche.
In the shuttle, Riker keeps trying to wipe the bird poop off his MACO uniform.
Riker asks Worf why his security people don't have cool guns like the MACO's. Worf replies: "It is a long story. And we do not discuss it with outsiders."
T'Pol tells Trip she will miss him...about once every seven years.
Trip murmurs "Where the hell were the damned MACO's?" throughout his death scene.
T'Pol comes to terms with Trip's death by beating Shran to a pulp.
At the signing of the Federation Charter, Phlox's smile gets so wide his head falls off.
T'Pol's comment as Archer is walking away ("You look very heroic") is replaced by a simple: "Nice bum."
Archer enters the auditorium and shouts: "HEY EVERYONE! SEE THAT MAN UP ON THE GALLERY? THAT’S DANIELS, A SECRET TIME AGENT FROM THE FUTURE!"
The alien delegates commemorate their first contact with humanity, by beating up Archer one last time.
