I should re watch it because I am struggling to put into context what seemed off. I have questions such as-is this how it has to be? She is the captain-not a civilian and so did she handle it appropriately being neutral ( for a lack of a better word). Was it neutrality to begin with and her actions weren't about not sympathizing but not jumping to conclusions?
I noticed she dreaded watching the man off himself so she is feeling remorse so did part of her believe what seven did? And that "Save the nanoprobes" line confuse that? I can't remember the episode in great detail.
What was so off, for me, was that for a small moment it really sounded like the captain actually cared about Seven as a person and was making a statement to say that she would do everything to fight for Seven if the accusation was true. This is a fair statement because the Captain has already declared she would remain neutral and seek the truth. But Janeway appeared, too, that she also wanted justice for Seven if she was, indeed, violated.
But she negates that sentiment by saying that she only cared about the danger the nanoprobes imposed. In effect, if Seven's claims were true at all, Janeway had said (accidentally or not) that she would do everything in her power to bring the guy down not because he violated Seven and damaged her emotionally (as a Borg, even) but because he took some dangerous technology.
I laughed when she said that line because it was so on-the-nose insensitive of Janeway and I don't think that's what the writers were going for but that's exactly how it came out.
But all throughout Season 4, Seven has been the abused Cinderella of the story. Taken from the home she knew and loved and forced to live a life that is strange to her. And even though the Captain insists on converting Seven, she doesn't respect Seven's unique upbringing, individuality, or Seven's perspective on her leadership. It's like she bought a puppy but hates that it yaps and chews on things. Well that's what puppies do.
To put it in a different position, would Janeway have behaved the same way if Chakotay were in this position? Kes? B'Elanna? Kim?