On a scale of "irreconcilable" to "not actually a problem", I'm pretty sure that "shuttlecraft names" are towards the right-hand end of that scale.
But I took the whole shuttlecraft, not just its name! None of the odd little shuttles glimpsed in Star Trek: The Motion Picture
served my needs, so I just decided to give the Enterprise
a proper big shuttle. I like to think it was sitting in some corner of the shuttlebay already, we just didn't see it in STTMP.