Sorry for the absence... More recent versions now uploaded. Some reshuffling in Part I, and some rough artwork to better visualize the ideas.
Basically, I'm done inserting all the FASA stuff, and fairly happy with most of the eras now that there is very little new material coming in. The parallel universe in the new movies isn't really the subject of this Guide, but I'm including the small craft anyway, and taking a few liberties with the ships. Yeah, the older ones should be common to both universes, but I'm still keeping them at TOS size for the time being; the new ones already have their parallels in the regular timeline, mainly in the form of humungous "command cruisers" and "battleships" from computer games.