Re: What happened to the rest of Vengeance's Section 31 crew?
Since that would have meant about 5 other beams on the bridge, and we only see the 3 of the Enterprise crew, nope. He just left them.
He could have beamed them up to another section of a ship, not locked up. That could have been a subplot.
R.I.P. Cadet James T. Kirk (-1651)