There is no word yet on if they intend of continue with the other series arcs at this time.
They have, however, included things from those series into Yamato 2199. Things that could or should logically be present, just were not in the original because they hadn't written those stories yet. Things like the dimentional submarine from the Bolar Wars, or the Comet Empire fleets fighting the Gamilas Empire in 2199. Or people like the other admirals or fleet captains we'd see later on doing stuff in the Gamilas War, or people who might be important later in the story that have connections to the present cast being shown early (Tokogawa's younger son for example).