You make some valid points, but are also nitpicking things. Of course, I would have preferred some issues to have been addressed differently or a couple of changes in dialogue, but those are pretty minor flaws.
I hate it when people dismiss flaws in a film by saying "the other films/series had them too", but sadly, it's the truth. "Hollywood" is not going to get everything right, and there will always be things we as fans have to, if not accept, then overlook.
I loved the movie despite its flaws, although I agree they were there.