I had always thought that Janeway and Chakotay were perfect for each other and had wanted them to get together so badly! I hated the fax that they didn't get together in Endgame and instead he went to a damn Borg drone! GRRR!! I remember myself being so angry at the time that I threw something at the TV set!
But it's good to know that it was kind of pursued a bit more in the novels.