Here's my Voyager rewrite. http://www.seedwiki.com/wiki/mytrek
It's a basic season overview, character discussion, and episode listing for each season. I'm only up to Season Two but hope to have Three within a week.
Some of the things I've changed are keeping the Starfleet/Maquis conflict around for longer, having Seska's child be Chakotay's, rearranging the Kazon and Vidiian storylines, and adding a few episodes here and there. I will be making the Year of Hell an actual year and removing some of the Borg episodes later on, and definitely changing Endgame.
If anyone has any ideas, comments, or suggestions, please let me know.