I've got the ultimate contender!
VOY: Living Witness
Because it is set in the 31st century and beyond on a world without further contact with the Federation, nobody is going to revisit it in our current timeline.
The only references I could think would be sth. like a Kyrian Starfleet officer from the far future in a DTI incident or, more likely, Warship Voyager
becoming playable in STO. Unless there's another short story about it...