Perhaps. I was under the impression that the Doctor [intended to] put the entire War into a time lock, with both Time Lords and Daleks alike being trapped inside
I agree. However, in spite of failing to lock in the Daleks, he may still view it as being worthwhile because his race had been essentially destroyed and replaced by something equally a threat to the universe as the Daleks.
Anyway, I think the biggest thing with the Daleks is they'll be encountered in the future just as invading aliens somewhere, rather than those who are seen because they're scheming to kill the Doctor.