She did write that rather touching message sometime after though. Thats gotta count for something. I liked that she was pissed at him at first. Hell, he was working with Cerberus....SHE SHOULD BE PISSED.
But he's Commander Shepard, he saved the whole galaxy and still found time to give her the best 6 minutes of her life. Sure, he chose to kill the government and now he's working with a terrorist organisation, but those 6 minutes were really special.
No, he has Miranda now, the woman with the genetically perfect ass that fulfilled his fantasy about doing it in the engine room while Tali awkwardly worked at her station around the corner. That was the best 4 minutes of Shepard's life.