I really enjoyed Starfleet Academy. The FMV sequences were well produced; everyone should see them just because of the production quality. It felt like a real film.
SA, however, paled in comparison to Klingon Academy with its advanced technology. The "ginsu" method of damage was very effective and well implemented. I remember following the forums for quite a while into the development of Bridge Commander. There was a guy from Paramount (Harry?) who would join in the discussion frequently.