The TOS 1701 actually has all the sets that will fit inside a 947' hull (assuming 9' decks for all but one deck in one episode, "Charlie-X") except for the flight deck. That would be where you would scale up the ship in relation to the shuttle.
And this is all before even referring to any tech manuals or blueprints
9' decks, if possible at all, would require paper-thin floors.
No. It would require discarding any blueprints that resemble FJ's or only loosely referencing MJ's, though.