Count me as one of the many who believe the two shows are so completely opposite to the other as to be incomparable to each other. I didn't vote as I would never give up either. I suppose if someone held a gun to my head, I'd say Bab 5 has an extremely slight edge from the perspective that story is king in my book and Bab 5's overall arc is slightly more epic and planned out.
1. best characters: Londo and Gkar put Bab5 slightly ahead of John and Aeryn.
2. best storyline/plot: Babylon 5
3. best setting: Farscape
4. best themes: Babylon 5
5. best acting: Farscape
6. best music: Babylon 5
7. best special effects: Farscape
8. best ending/finale: Farscape
9. best overall (see poll): Babylon 5