Re: 5x10 Vincent and the Doctor (Grading/Discussion) SPOILERS!!
That wasn't the only allusion to Rory...when they're at the cafe/pub at the beginning and the Doctor sees the two of them flirting with each other he has a concerned look on his face and then kind of lets it just be. Obviously that look was his concern regarding Rory. I think I mentioned that in another post.
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Ignoring the The Last Stand since 2011.