I started this here
and decided to make a new thread for it since it's really going somewhere now.
I realize that there is another NY-01 class floating around here but I thought of this right before he posted
I've got this thing cut down into decks now and I'll be starting in on filling it out next. Here's the cross section I used to figure out how to break it down. Blue is the deck, magenta is the overhead and red is important features such as docking ports and power transfer conduits. Near the middle of the secondary hull you can see the main reactor. The space at the fore end of the secondary hull is the fusion reactor. The space in the belly is the deuterium tanks. The aft lower space is the hold and then the shuttle bay is above that.