I don't think we ever heard of a Bajor general
The trilogy that featured Colonel Day also prominently featured General Krim, an apparent sympathizer to the cause of the Circle movement who repeatedly withdrew while these armed rebels advanced.
The impression we got was that Krim was a really big boss in the organization, although not necessarily the very top dog. Presumably, the Militia felt the need to have a few general/flag officers for show if not for an organizatory need...
Even the tiny pissant Continental Army back during the revolution found a need for generals. Regardless of the fact that the Bajoran militia was tiny compared to starfleet it was still a global organization that probably had numbers greater than the modern day US military