There may be, there may NOT be. The timing and the hoopla seem a bit fishy to me. A lot will depend on how it's written I suppose. Will these "good Muslem heroes" be shown cleaning house on Talibans and Al-Qs or will this be a "learning experince" puff job where the "westerners" learn that "everthing they (think) they know about Muslems is wrong"?
Compared to the multiple
times that Western characters lecture others on their failings, this is tit for tat.
And as for 'good Muslim
heroes' cleaning house on Al-Q or the Taliban; why should they have to? The story can be about both sets of heroes fighting an alien invasion-it doesn't necessarily have to have them fight the great American bogeymen just so that an audience of mostly American comic book fanboys can see the heroes kick the butts of said bogeymen from here to Pluto.