It wasn't written convincingly for me to actually realize it was unwanted attention. It's written, in my eyes, on the comparision from her POV of two different bosses, one being loyal to the "cause" (i.e. the rebellion), and then the other (in my eyes, not as loyal) catching up on what she is doing. I might have missed the whole harrassment feel to it. It's not about liking it - it's just that I missed it on the second read.
Of course, now after the third read I've caught it in graphic detail. I think I may have been confusing the good person loyal to the cause with the bad one. I do like the shot out to Gul Dukat.