I'm apologize in advance if this is out-of-place in this thread, but I have to ask:
The HD-DVDs of TOS-Remastered released by CBS/Paramount include an "interactive Enterprise inspection",
which includes and interesting flyby of the Hangar Deck, including a hitherto unseen Flight Control Tower-type structure
overlooking the fantail.
Would there be an allowance for something like this in your plans?
I don't see how all the interior of that space can possibly fit inside that design feature -- or how someone would get in and out of said feature without using the transporter.